Korthauer Lab Statistics + Genomics

Tools

We develop and maintain freely available, open source software implementations of genomic data science tools.

decemedip
decemedip

Deconvolution of cell types from MeDIP-seq

RAMEN
RAMEN

Regional Association of Methylome variability with the Exposome and geNome

vmrseq
vmrseq

R package for detecting variably methylated regions (VMRs) from single-cell methylation sequencing

bayesDCA
bayesDCA

R package to Perform Bayesian Decision Curve Analysis for clinical prediction models and diagnostic tests

dmrseq
dmrseq

an R/Bioconductor package for differential methylation analysis using bulk whole genome bisulfite sequencing data

scDD
scDD

an R/Bioconductor package for differential distribution analysis using single-cell RNA-sequencing data

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SingleCellExperiment
SingleCellExperiment

an R/Bioconductor package defining S4 Classes for storing Single Cell Data

scDDboost
scDDboost

an R package to analyze changes in the distribution of single-cell expression data between two experimental conditions with multiple cell types

oligoGames
oligoGames

an R package for the analysis of tiled massively parallel reporter assays (MPRAs)